idat_to_betas

idat_to_betas(
    grn,
    red,
    *,
    platform=None,
    sample_id=None,
    correct=True,
    detection_p=DETECTION_P,
    dye=None,
    raw=False,
)

One Grn/Red IDAT pair to a beta vector, through the full chain.

Parameters

Name	Type	Description	Default
platform	str | None	None detects it from the bead-address count and refuses rather than guessing when nothing matches within 10%.	None
correct	bool	Run pOOBAH detection and noob background correction. False still computes detection – it costs nothing and an undetected probe is not a measurement whatever else is done – and then returns uncorrected betas.	True
detection_p	float | None	Probes above this become NaN. None keeps them, which is a decision to score numbers that are not measurements.	DETECTION_P
dye	str | None	None (default), "linear" or "nonlinear". Off by default; see the warning on :func:dye_bias for the measurement that decided that.	None
raw	bool	Return the :class:RawSignal instead of the betas, for anyone who wants the intermediate.	False