read_idat_dir

read_idat_dir(
    paths,
    *,
    platform=None,
    obs=None,
    correct=True,
    detection_p=DETECTION_P,
    dye=None,
)

Every Grn/Red pair in a directory, as one scoreable matrix.

Pairs are matched on the filename stem before _Grn/_Red, which is Illumina’s own convention and what GEO distributes. The run manifest records which array manifest resolved the addresses and which steps ran, because a beta matrix is a function of both.