Cross-tabulate unsupervised clusters against gate labels — cluster_gate_agreement • cyRAVEN

Cross-tabulate unsupervised clusters against gate labels

Usage

cluster_gate_agreement(cells, cluster, other_pattern = "^Other|unclassified")

Arguments

cells: embedding cell table with population_label
cluster: integer vector from run_unsupervised_clusters()
other_pattern: regex identifying the catch-all label

Value

list(per_cluster, per_population)