Each sample's composition by exclusive label

Every CD45+ cell carries exactly one label from score_populations(), the most specific population it satisfies or the catch-all remainder. Counted per sample, those labels partition the parent, which is what a compositional analysis needs; the declared populations' own gates overlap and nest, and do not.

Usage

exclusive_label_frequencies(pops, gates, verdicts = NULL, panel_of = NULL)

Arguments

pops

per-sample scored populations, each with scored$labels.

gates

per-sample gate results, each with masks$cd45_pos.

verdicts

per-sample staining verdicts, for is_control and qc_status.

panel_of

named character, sample id to panel.

Value

data.frame with sample_id, panel, population (the label), count, pct_of_cd45_pos, is_control and qc_status, every label seen in the run present for every sample (zero where absent), or NULL.