Learn and validate a gate for each externally supplied label — explain_external_labels • cyRAVEN

Learn and validate a gate for each externally supplied label

Usage

explain_external_labels(
  cells,
  features,
  min_cells = 200L,
  max_labels = 6L,
  donor_col = "sample_id",
  max_donors = 8L,
  transfer_max_cells = 20000L,
  seed = 42L,
  ...
)

Arguments

cells: embedding cell table carrying external_label
features: marker columns to gate on
min_cells: smallest label worth gating
max_labels: ceiling on how many labels to process
donor_col: column holding the donor identity for the transferability split
max_donors, transfer_max_cells: caps passed to gate_transferability()
seed: seed for the local RNG stream
...: passed to explain_cluster()

Value

list(summary, polygons, transfer, transfer_summary, strategies), or NULL