Unsupervised-clustering figure: the embedding by cluster, next to the same embedding by gate label

WHY SIDE BY SIDE AND NOT TWO FILES: the entire value is the comparison. A cluster panel alone is a pretty picture; against the gate panel it is an audit, and a reader can see in one glance which islands the spec named and which it missed.

Usage

fig_unsupervised_clusters(
  cells,
  cluster,
  outfile,
  agreement = NULL,
  panel_label = "",
  dpi = 200,
  colors = fcs_colors()
)

Arguments

cells

Embedded cell table: one row per cell, carrying umap_1/umap_2, sample_id, population_label and one column per marker.

cluster

Integer vector of cluster assignments, one per cell.

outfile

Path to write the figure to.

agreement

The agreement.

panel_label

Marker-panel name added to the figure title; empty for none. Default "".

dpi

Resolution in dots per inch. May be reduced automatically to respect the raster ceiling; see safe_ggsave(). Default 200.

colors

Named list of colours; defaults to the package palette. See fcs_colors(). Default fcs_colors().