How far each population moves if the flagged windows are excluded

The quantity that turns a QC flag into a decision. A file with a visible anomaly that moves no population by more than its own gate uncertainty does not need re-acquiring.

Usage

frequency_delta_if_cleaned(tmat, thr, parent, spec, keep, scoped = NULL)

Arguments

tmat

transformed marker matrix for one sample

thr

named threshold vector

parent

logical parent-gate mask

spec

population specification

keep

logical, TRUE for events to retain

scoped

cuts derived within parent populations, or NULL; held fixed.

Value

data.frame with the reported and cleaned percentage per population