Local Inverse Simpson's Index of a label over a neighbourhood graph — lisi_score • cyRAVEN

Local Inverse Simpson's Index of a label over a neighbourhood graph

Usage

lisi_score(coords, labels, k = 30L)

Arguments

coords: numeric matrix, cells x dimensions (the embedding, or scaled marker space)
labels: character/factor vector, one per row of coords
k: neighbourhood size

Value

numeric vector of per-cell iLISI