One row per acquired file. Splits into the three structures the pipeline consumes, applying the same coercions as the separate loaders so that a study analysed either way produces the same numbers.
Usage
read_samplesheet(
path,
fcs_files,
column_map = default_column_map(),
value_map = default_value_map(),
reference_date = Sys.Date(),
count_unit = "cells/uL"
)Arguments
- path
Path to the sheet (CSV or TSV; delimiter and encoding detected).
- fcs_files
The fcs files being analysed, for the coverage check.
- column_map
The column map. Default
default_column_map().- value_map
The value map. Default
default_value_map().- reference_date
The reference date. Default
Sys.Date().- count_unit
"cells/uL" or "cells/mL"; the latter is divided by 1000.