Write a conformance baseline from an accepted run — write_spec

Summaries, not cells: the file holds per-marker threshold location and spread, the fallback rate, per-population frequency location and spread, and the specification text. It carries no event-level data and no patient data, so it can be version-controlled next to the config it describes.

Usage

write_spec_baseline(
  path,
  thr_all,
  freq,
  spec,
  opt = list(),
  cofactors = list(),
  transforms = list()
)

Arguments

path: destination .rds
thr_all: the thresholds table (thresholds_used.csv in memory)
freq: the frequency table
spec: population specification
opt: the resolved option list
cofactors: per-panel cofactors
transforms: per-panel transforms from make_transform(); their method and parameters are stored so a later run's cuts can be put on this run's scale (see specification_conformance()).

Value

path, invisibly